Publication List

Research Papers (2002+)

• 2008

1. Morozov, A.V., Fortney, K., Gaykalova, D.A., Studitsky, V.M., Widom, J. & Siggia, E.D. (2008). Extrinsic and intrinsic nucleosome positioning signals. arXiv:0805.4017 pdf

• 2007

2. Morozov, A.V. & Siggia, E.D. (2007). Connecting protein structure with predictions of regulatory sites. Proc.Nat.Acad.Sci. 104, 7068-7073. pdf

• 2006

3. Foat, B.C., Morozov, A.V. & Bussemaker, H.J. (2006). Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE. Bioinformatics 22, e141-e149. pdf
4. Morozov, A.V., Tsemekhman, K. & Baker, D. (2006). Electron density redistribution accounts for half the cooperativity of alpha helix formation. J.Phys.Chem.B Lett. 110, 4503-4505. pdf

• 2005

5. Morozov, A.V., Havranek, J.J., Baker, D. & Siggia, E.D. (2005). Protein-DNA binding specificity predictions with structural models. Nucl.Acids Res. 33, 5781-5798. pdf
6. Morozov, A.V. & Uscinski, B.J. (2005). A hierarchy of approximate solutions for the fourth moment of waves in random media. unpublished.

• 2004

7. Misura, K., Morozov, A.V. & Baker, D. (2004). Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction. J.Mol.Biol. 342, 651-664. pdf
8. Morozov, A.V., Kortemme, T., Tsemekhman, K. & Baker, D. (2004). Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations. Proc.Nat.Acad.Sci., 101, 6946-6951. pdf
9. Morozov, A.V., Misura, K., Tsemekhman, K. & Baker, D. (2004). Comparison of quantum mechanics and molecular mechanics dimerization energy landscapes for pairs of ring-containing amino acids in proteins. J.Phys.Chem. B, 108, 8489-8496. pdf

• 2003

10. Tsai, J., Bonneau, R., Morozov, A.V., Kuhlman, B., Rohl, C.A. & Baker, D. (2003). An improved protein decoy set for testing energy functions for protein structure prediction. Proteins: Str.,Func.,Gen., 53, 76-87. pdf
11. Gray, J.J., Moughon, S., Kortemme, T., Schueler-Furman, O., Misura, K., Morozov, A.V. & Baker, D. (2003). Protein-protein docking predictions for the CAPRI experiment. Proteins: Str.,Func.,Gen., 52, 118-122. pdf
12. Morozov, A.V., Kortemme, T. & Baker, D. (2003). Evaluation of models of electrostatic interactions in proteins. J.Phys.Chem. B 107, 2075-2090. pdf
13. Kortemme, T., Morozov, A.V. & Baker, D. (2003). An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes. J.Mol.Biol. 326, 1239-1259. pdf

• 2002

14. Alm, E., Morozov, A.V., Kortemme, T. & Baker, D. (2002). Simple physical models connect theory and experiment in protein folding kinetics. J.Mol.Biol. 322, 463-476. pdf
15. Morozov, A.V. (2002). Two-frequency mutual coherence function of electromagnetic waves in random media: a path-integral variational solution. J.Opt.Soc.Am. A 19, 2074-2084. pdf

Reviews

1. Morozov, A.V. & Kortemme, T. (2005). Potential functions for hydrogen bonds in protein structure prediction and design. Adv.Prot.Chem. 72, 1-38.