Everything is setup in the area /users/h2/quarknet/
To begin, cd into to CMSSW_5_3_28/src

cd CMSSW_5_3_28/src

Copy over the "plots_2012" directory and everything below it:

cp -r /users/h2/quarknet/CMSSW_5_3_28/src/plots_2012/ . #(that dot is needed!)

Run jobs

Go to the plots_2012/RootC directory
The analysis code is in a macro file called Quarknet.C
Right now it is a simple file that makes a couple of plots

To run the script go to CMSSW_5_3_28/src/plots_2012 and paste the following code:
bash test